Cyclophosphamide analogs for use as immunogens and assay conjugates for an immunoassay of cyclophosphamide and ifosfamide

ABSTRACT

The present application relates to antibodies that bind to small molecules such as cyclophosphamide, ifosfamide, and analogs thereof, and immunological assays for determining the presence and/or quantifying the amount of cyclophosphamide and/or ifosfamide in a sample. By way of example, such immunological assays can be used for environmental testing.

CROSS-REFERENCE TO RELATED APPLICATIONS

The present application is continuation of U.S. patent application Ser.No. 15/757,854, filed Mar. 6, 2018, which is the U.S. National Phase ofPCT Application No. PCT/US2016/050495, filed Sep. 7, 2016, which claimsthe benefit of U.S. Provisional App. No. 62/216,943, filed Sep. 10,2015, the entirety of which is hereby incorporated by reference.

FIELD

The present application relates to the field of antibodies that bind tosmall molecules such as cyclophosphamide, ifosfamide, and analogsthereof, and immunological assays for determining the presence and/orquantifying the amount of cyclophosphamide and/or ifosfamide in asample. By way of example, such antibodies and/or immunological assayscan be used for environmental testing.

BACKGROUND

Cyclophosphamide is a prodrug of a nitrogen mustard alkylating agent, inwhich the reactivity of the bis(2-chloroethyl)amino group is attenuated.Upon oxidation in vivo the six-membered ring opens, enhancing thereactivity of the nitrogen mustard, which then acts to cross-link DNA.Cyclophosphamide has severe and life-threatening adverse effects,including acute myeloid leukemia, bladder cancer, hemorrhagic cystitis,and permanent infertility, especially at higher doses. Ifosfamide isalso a nitrogen mustard alkylating agent used in the treatment ofcancer. Ifosfamide can cause encephalopathy, affects peripheral nerves,and interfere with neurological development in children.

So far, there is no commercial immunoassay kit for the detection ofcyclophosphamide or ifosfamide. Additionally there are no commerciallyavailable antibodies against cyclophosphamide or ifosfamide. Therefore,there exists a need for developing immunoassays for these cytotoxicagents.

SUMMARY

Embodiments of the present application are directed to a family ofcyclophosphamide analogs that may be used as immunogens for generatingantibodies that recognize cyclophosphamide and/or ifosfamide. Thesecyclophosphamide analogs can also be used to generate assay conjugatesthat can be used in an immunoassay for detection of cyclophosphamideand/or ifosfamide. Each of the analogs contains the functional groupsfor the purpose of conjugation but maintain the six-membered ring as animportant epitope for antibody generation and drug recognition.

Some embodiments of the present application are directed tocyclophosphamide analogs comprising a structure of Formula (I) or (II):

where R^(1a) is selected from hydrogen or —(CH₂)_(m)—X; R^(2a) is—(CH₂)_(n)—Y; R^(1b) is —(CH₂)_(m)—X; each of R^(2b) and R^(2b′) isindependently selected from —(CH₂)_(k)—Z; each R^(3a), R^(4a), R^(5a),R^(3b), R^(4b) and R^(5b) is independently selected from hydrogen,halogen, hydroxy, amino, cyano, C₁-C₆ alkyl, C₂-C₆ alkenyl, C₂-C₆alkynyl, C₃-C₇ cycloalkyl, 5-10 membered heterocyclyl, aryl, aralkyl,5-10 membered heteroaryl, C₁-C₆ alkoxy, C₁-C₆ alkoxy(C₁-C₆)alkyl,aryloxy, halo(C₁-C₆)alkyl, halo(C₁-C₆)alkoxy, C₁-C₆ alkylthio, arylthio,amino(C₁-C₆)alkyl, nitro, O-carbamyl, N-carbamyl, O-thiocarbamyl,N-thiocarbamyl, C-amido, N-amido, S-sulfonamido, N-sulfonamido,C-carboxy, O-carboxy, acyl, and oxo (═O); X is a functional groupselected from amine, thiol, carboxylic acid, hydrazide, hydrazine,oxime, or hydroxylamine; Y is a functional group independently selectedfrom halogen, hydroxy, amine, thiol, carboxylic acid, hydrazide,hydrazine, oxime, or hydroxylamine; Z is selected from halogen orhydroxy; and each m, n and k is independently an integer from 2 to 10.

In some embodiments of the compounds of Formula (I), R^(1a) is hydrogenand R^(2a) is —(CH₂)_(n)—Y, wherein Y is selected from a functionalgroup that is capable of forming conjugate with a carrier protein, forexample, amine, thiol, carboxylic acid, hydrazide, hydrazine, oxime, orhydroxylamine. In some such embodiments, Y is selected from thiol orcarboxylic acid. In some such embodiments, n is an integer of 2.

In some alternative embodiments of the compounds of Formula (I), R^(1a)is —(CH₂)_(m)—X wherein X is selected from a functional group that iscapable of forming conjugate with a carrier protein, for example, amine,thiol, carboxylic acid, hydrazide, hydrazine, oxime, or hydroxylamine.In some such embodiments, X is selected from thiol or carboxylic acid.In some such embodiments, R^(2a) is —(CH₂)_(n)—Y, where Y is selectedfrom halogen (e.g., chloro) or hydroxy. In some such embodiments, m isan integer of 3 and n is an integer of 2.

In some embodiments of the compounds of Formula (II), R^(1b) is—(CH₂)_(m)—X wherein X is selected from a functional group that iscapable of forming conjugate with a carrier protein, for example, amine,thiol, carboxylic acid, hydrazide, hydrazine, oxime, or hydroxylamine.In some such embodiments, X is selected from thiol or carboxylic acid.In some such embodiments, each R^(2b) and R^(2b′) is —(CH₂)_(k)—Z and Zis selected from halogen (e.g., chloro) or hydroxy. In some suchembodiments, m is an integer of 2. In some embodiments, at least one kis an integer of 2. In some further embodiments, both k is an integer of2.

In some embodiments, at least one of R^(3a), R^(4a), R^(5a) of Formula(I) and at least one of R^(3b), R^(4b), R^(5b) of Formula (II) ishydrogen. In some further embodiments, each R^(3a), R^(4a), R^(5a) ofFormula (I) and R^(3b), R^(4b), R^(5b) of Formula (II) is hydrogen.

Some embodiments of the present application are directed to an immunogencomprising a cyclophosphamide analog as described herein covalentlybonded to an immunogenic polymer or carrier through the functionalgroups X or Y of the analog compound. In some embodiments, theimmunogenic polymer or carrier is selected from an immunologicallyactive protein or polypeptide.

Some embodiments of the present application are directed to an antibodywhich substantially selectively binds to cyclophosphamide, ifosfamide,or cyclophosphamide and ifosfamid. In some embodiments, the antibody isderived from an immunogen described herein. As such, in someembodiments, the antibody binds to cyclophosphamide, ifosfamide, orcyclophosphamide and ifosfamide, and further binds to a compound ofFormula (I), in which a carrier is covalently bound to either X or Y,and in which the carrier comprises at least one of an albumin orfragment thereof, a serum protein, a lipoprotein, bovine serum albumin(BSA), keyhole limpet hemocyanin (KLH), egg ovalbumin, bovinethyroglobulin (BTG), a synthetic poly(amino acids), a polyamino-polysaccharide, a poly nucleic acid, a poly amino acid, apolysaccharide, or a solid particle. In some embodiments, the antibodybinds to cyclophosphamide, ifosfamide, or cyclophosphamide andifosfamide, and further binds to a compound of Formula (II), in which acarrier is covalently bound to X, in which the carrier comprises atleast one of an albumin or fragment thereof, a serum protein, alipoprotein, bovine serum albumin (BSA), keyhole limpet hemocyanin(KLH), egg ovalbumin, bovine thyroglobulin (BTG), a synthetic poly(aminoacids), a poly amino-polysaccharide, a poly nucleic acid, a poly aminoacid, a polysaccharide, or a solid particle. In some embodiments, theantibody binds to cyclophosphamide and the carrier comprises KLH. Insome embodiments, the antibody binds to ifosfamide and the carriercomprises KLH. In some embodiments, the antibody comprises a monoclonalantibody. In some embodiments, the antibody binds to cyclophosphamideand ifosfamide, and the carrier comprises KLH. In some embodiments, theantibody comprises a polyclonal antibody.

Some embodiments of the present application are directed to animmunoassay for detecting the presence of cyclophosphamide and/orifosfamide in a sample, comprising an assay conjugate, where the assayconjugate comprises a cyclophosphamide analog as described hereincovalently bonded to a carrier through the functional groups X or Y ofthe analog compound. In some embodiments, the carrier is selected from aprotein or polypeptide. In some embodiments, the carrier comprises atleast one of an albumin or fragment thereof, a serum protein, alipoprotein, bovine serum albumin (BSA), keyhole limpet hemocyanin(KLH), egg ovalbumin, bovine thyroglobulin (BTG), a synthetic poly(aminoacids), a poly amino-polysaccharide, a poly nucleic acid, a poly aminoacid, a polysaccharide, or a solid particle.

Some embodiments of the present application are directed to a kitcomprising reagents for detecting the presence of cyclophosphamideand/or ifosfamide in a sample, one of the reagents being a conjugate ofa carrier covalently bonded to a cyclophosphamide analog as describedherein through the functional groups X or Y of the analog compound. Insome embodiments, the carrier is selected from a protein or polypeptide.In some embodiments, the kit further comprises an antibody as describedherein. In some embodiments, the antibody binds to cyclophosphamideand/or ifosfamide as described herein.

In some embodiments, a cyclophosphamide analog as described hereinfurther comprises a carrier covalently bound to X, wherein the carriercomprises at least one of an albumin or fragment thereof, a serumprotein, a lipoprotein, bovine serum albumin (BSA), keyhole limpethemocyanin (KLH), egg ovalbumin, bovine thyroglobulin (BTG), a syntheticpoly(amino acids), a poly amino-polysaccharide, a poly nucleic acid, apoly amino acid, a polysaccharide, or a solid particle. In someembodiments, a cyclophosphamide analog as described herein furthercomprises a carrier covalently bound to Y, wherein the carrier comprisesat least one of an albumin or fragment thereof, a serum protein, alipoprotein, bovine serum albumin (BSA), keyhole limpet hemocyanin(KLH), egg ovalbumin, bovine thyroglobulin (BTG), a synthetic poly(aminoacids), a poly amino-polysaccharide, a poly nucleic acid, a poly aminoacid, a polysaccharide, or a solid particle.

Some embodiments of the present application are directed to an antibodythat binds specifically to a cyclophosphamide analog as describedherein, for example a cyclophosphamide analog further comprising acarrier covalently bound to X, and/or further comprising a carrier boundto Y as described herein. In some embodiments, the antibody binds to acyclic cyclophosphamide with a dissociation constant (K_(d)) that isnumerically less than 1/10 the dissociation constant for acycliccyclophosphamide of formula (III). In some embodiments, the antibodybinds to a cyclic cyclophosphamide with a dissociation constant (Kd)that is numerically less than 1/1000 the dissociation constant foracyclic cyclophosphamide of formula (III). In some embodiments, theantibody comprises a monoclonal antibody. In some embodiments, theantibody comprises a polyclonal antibody.

Some embodiments of the present application are directed to methods ofmaking an antibody that binds specifically to cyclophosphamide. Themethod can comprise administering to a host organism, an immunogen asdescribed herein or a compound of Formula (I) (in which a carrier iscovalently bound to X or Y, in which the carrier comprises at least oneof an albumin or fragment thereof, a serum protein, a lipoprotein,bovine serum albumin (BSA), keyhole limpet hemocyanin (KLH), eggovalbumin, bovine thyroglobulin (BTG), a synthetic poly(amino acids), apoly amino-polysaccharide, a poly nucleic acid, a poly amino acid, apolysaccharide, or a solid particle), or a compound of Formula (II) (inwhich a carrier is covalently bound to X, in which the carrier comprisesat least one of an albumin or fragment thereof, a serum protein, alipoprotein, bovine serum albumin (BSA), keyhole limpet hemocyanin(KLH), egg ovalbumin, bovine thyroglobulin (BTG), a synthetic poly(aminoacids), a poly amino-polysaccharide, a poly nucleic acid, a poly aminoacid, a polysaccharide, or a solid particle). In some embodiments, thecarrier comprises KLH. The method can comprise isolatingantibody-producing cells or antibodies from the host organism. Themethod can comprise screening antibodies derived from theantibody-producing cells or the antibodies from the host organism foraffinity to cyclophosphamide. In some embodiments, the host organismcomprises a mouse, rat, hamster, guinea pig, rabbit, donkey, or goat. Insome embodiments, the carrier comprises KLH. In some embodiments, theantibody-producing cells are isolated, and antibodies derived from theantibody-producing cells are screened for affinity to cyclophosphamide,and the antibody that binds specifically to cyclophosphamide ismonoclonal. In some embodiments, the method further comprisesconstructing hybridomas from the isolated antibody-producing cells. Insome embodiments, the method further comprises screening nucleic acidsfrom the isolated antibody-producing cells by phage display. In someembodiments, the method further comprises screening for antibodies thatbind specifically to cyclophosphamide compared to an acyclic metaboliteof formula (III). In some embodiments, the antibodies from the hostorganism are screened for affinity to cyclophosphamide, and the antibodythat binds specifically to cyclophosphamide is polyclonal.

Some embodiments of the present application are directed to methods ofmaking an antibody that binds specifically to ifosfamide. The method cancomprise administering to a host organism, an immunogen as describedherein or a compound of Formula (I) (in which a carrier is covalentlybound to X or Y, in which the carrier comprises at least one of analbumin or fragment thereof, a serum protein, a lipoprotein, bovineserum albumin (BSA), keyhole limpet hemocyanin (KLH), egg ovalbumin,bovine thyroglobulin (BTG), a synthetic poly(amino acids), a polyamino-polysaccharide, a poly nucleic acid, a poly amino acid, apolysaccharide, or a solid particle), or a compound of Formula (II) (inwhich a carrier is covalently bound to X, in which the carrier comprisesat least one of an albumin or fragment thereof, a serum protein, alipoprotein, bovine serum albumin (BSA), keyhole limpet hemocyanin(KLH), egg ovalbumin, bovine thyroglobulin (BTG), a synthetic poly(aminoacids), a poly amino-polysaccharide, a poly nucleic acid, a poly aminoacid, a polysaccharide, or a solid particle). In some embodiments, thecarrier comprises KLH. The method can comprise isolatingantibody-producing cells or antibodies from the host organism. Themethod can comprise screening antibodies derived from theantibody-producing cells or the antibodies from the host organism foraffinity to ifosfamide. In some embodiments, the host organism comprisesa mouse, rat, hamster, guinea pig, rabbit, donkey, or goat. In someembodiments, the carrier comprises KLH. In some embodiments, theantibody-producing cells are isolated, and antibodies derived from theantibody-producing cells are screened for affinity to ifosfamide, andthe antibody that binds specifically to ifosfamide is monoclonal. Insome embodiments, the method further comprises constructing hybridomasfrom the isolated antibody-producing cells. In some embodiments, themethod further comprises screening nucleic acids from the isolatedantibody-producing cells by phage display. In some embodiments, themethod further comprises screening for antibodies that bind specificallyto ifosfamide compared to an acyclic metabolite of formula (III). Insome embodiments, the antibodies from the host organism are screened foraffinity to ifosfamide, and the antibody that binds specifically toifosfamide is polyclonal.

DETAILED DESCRIPTION OF THE EMBODIMENTS Definitions

Unless defined otherwise, all technical and scientific terms used hereinhave the same meaning as is commonly understood by one of ordinary skillin the art. All patents, applications, published applications and otherpublications referenced herein are incorporated by reference in theirentirety unless stated otherwise. In the event that there is a pluralityof definitions for a term herein, those in this section prevail unlessstated otherwise. As used in the specification and the appended claims,the singular forms “a,” “an” and “the” include plural referents unlessthe context clearly dictates otherwise. Unless otherwise indicated,conventional methods of mass spectroscopy, NMR, HPLC, protein chemistry,biochemistry, recombinant DNA techniques and pharmacology are employed.The use of “or” or “and” means “and/or” unless stated otherwise.Furthermore, use of the term “including” as well as other forms, such as“include”, “includes,” and “included,” is not limiting. As used in thisspecification, whether in a transitional phrase or in the body of theclaim, the terms “comprise(s)” and “comprising” are to be interpreted ashaving an open-ended meaning. That is, the terms are to be interpretedsynonymously with the phrases “having at least” or “including at least.”When used in the context of a process, the term “comprising” means thatthe process includes at least the recited steps, but may includeadditional steps. When used in the context of a compound, composition,or device, the term “comprising” means that the compound, composition,or device includes at least the recited features or components, but mayalso include additional features or components.

The section headings used herein are for organizational purposes onlyand are not to be construed as limiting the subject matter described.

As used herein, “amine” or “amino” group refers to a “—NR_(A)R_(B)”group in which R_(A) and R_(B) are each independently selected fromhydrogen, C₁₋₆ alkyl, C₂₋₆ alkenyl, C₂₋₆ alkynyl, C₃₋₇ carbocyclyl,C₆₋₁₀ aryl, 5-10 membered heteroaryl, and 5-10 membered heterocyclyl. Anon-limiting example includes free amino (i.e., —NH₂).

The term “halogen” or “halo,” as used herein, means any one of theradio-stable atoms of column 7 of the Periodic Table of the Elements,e.g., fluorine, chlorine, bromine, or iodine, with fluorine and chlorinebeing preferred.

As used herein, “carboxylic acid” refers to a “—(C=O)—OH” group.

As used herein, “hydrazide” refers to a “—(C═O)—NH—NH₂” group.

As used herein, “hydrazine” refers to a “—NH—NH₂” group.

As used herein, “oxime” refers to a “—RC═N—OH” group, in which R isselected from hydrogen, C₁₋₆ alkyl, C₂₋₆ alkenyl, C₂₋₆ alkynyl, C₃₋₇carbocyclyl, C₆₋₁₀ aryl, 5-10 membered heteroaryl, and 5-10 memberedheterocycle.

As used herein, “thiol” refers to a “—SH” group.

As used herein, “alkyl” refers to a straight or branched hydrocarbonchain that is fully saturated (i.e., contains no double or triplebonds). The alkyl group may have 1 to 20 carbon atoms (whenever itappears herein, a numerical range such as “1 to 20” refers to eachinteger in the given range; e.g., “1 to 20 carbon atoms” means that thealkyl group may consist of 1 carbon atom, 2 carbon atoms, 3 carbonatoms, etc., up to and including 20 carbon atoms, although the presentdefinition also covers the occurrence of the term “alkyl” where nonumerical range is designated). The alkyl group may also be a mediumsize alkyl having 1 to 9 carbon atoms. The alkyl group could also be alower alkyl having 1 to 4 carbon atoms. The alkyl group may bedesignated as “C₁₋₄ alkyl” or similar designations. By way of exampleonly, “C₁₋₄ alkyl” indicates that there are one to four carbon atoms inthe alkyl chain, i.e., the alkyl chain is selected from the groupconsisting of methyl, ethyl, propyl, iso-propyl, n-butyl, iso-butyl,sec-butyl, and t-butyl. Typical alkyl groups include, but are in no waylimited to, methyl, ethyl, propyl, isopropyl, butyl, isobutyl, tertiarybutyl, pentyl, hexyl, and the like.

As used herein, “alkoxy” refers to the formula —OR wherein R is an alkylas is defined above, such as “C₁₋₉ alkoxy”, including but not limited tomethoxy, ethoxy, n-propoxy, 1-methylethoxy (isopropoxy), n-butoxy,iso-butoxy, sec-butoxy, and tert-butoxy, and the like.

As used herein, “alkylthio” refers to the formula —SR wherein R is analkyl as is defined above, such as “C₁₋₉ alkylthio” and the like,including but not limited to methylmercapto, ethylmercapto,n-propylmercapto, 1-methylethylmercapto (isopropylmercapto),n-butylmercapto, iso-butylmercapto, sec-butylmercapto,tert-butylmercapto, and the like.

As used herein, “alkenyl” refers to a straight or branched hydrocarbonchain containing one or more double bonds. The alkenyl group may have 2to 20 carbon atoms, although the present definition also covers theoccurrence of the term “alkenyl” where no numerical range is designated.The alkenyl group may also be a medium size alkenyl having 2 to 9 carbonatoms. The alkenyl group could also be a lower alkenyl having 2 to 4carbon atoms. The alkenyl group may be designated as “C₂₋₄ alkenyl” orsimilar designations. By way of example only, “C₂₋₄ alkenyl” indicatesthat there are two to four carbon atoms in the alkenyl chain, i.e., thealkenyl chain is selected from the group consisting of ethenyl,propen-1-yl, propen-2-yl, propen-3-yl, buten-1-yl, buten-2-yl,buten-3-yl, buten-4-yl, 1-methyl-propen-1-yl, 2-methyl-propen-1-yl,1-ethyl-ethen-1-yl, 2-methyl-propen-3-yl, buta-1,3-dienyl,buta-1,2,-dienyl, and buta-1,2-dien-4-yl. Typical alkenyl groupsinclude, but are in no way limited to, ethenyl, propenyl, butenyl,pentenyl, and hexenyl, and the like.

As used herein, “alkynyl” refers to a straight or branched hydrocarbonchain containing one or more triple bonds. The alkynyl group may have 2to 20 carbon atoms, although the present definition also covers theoccurrence of the term “alkynyl” where no numerical range is designated.The alkynyl group may also be a medium size alkynyl having 2 to 9 carbonatoms. The alkynyl group could also be a lower alkynyl having 2 to 4carbon atoms. The alkynyl group may be designated as “C₂₋₄ alkynyl” orsimilar designations. By way of example only, “C₂₋₄ alkynyl” indicatesthat there are two to four carbon atoms in the alkynyl chain, i.e., thealkynyl chain is selected from the group consisting of ethynyl,propyn-1-yl, propyn-2-yl, butyn-1-yl, butyn-3-yl, butyn-4-yl, and2-butynyl. Typical alkynyl groups include, but are in no way limited to,ethynyl, propynyl, butynyl, pentynyl, and hexynyl, and the like.

As used herein, “aryl” refers to an aromatic ring or ring system (i.e.,two or more fused rings that share two adjacent carbon atoms) containingonly carbon in the ring backbone. When the aryl is a ring system, everyring in the system is aromatic. The aryl group may have 6 to 18 carbonatoms, although the present definition also covers the occurrence of theterm “aryl” where no numerical range is designated. In some embodiments,the aryl group has 6 to 10 carbon atoms. The aryl group may bedesignated as “C₆₋₁₀ aryl,” “C₆ or C₁₀ aryl,” or similar designations.Examples of aryl groups include, but are not limited to, phenyl,naphthyl, azulenyl, and anthracenyl.

As used herein, “aryloxy” and “arylthio” refers to RO— and RS—, in whichR is an aryl as is defined above, such as “C₆₋₁₀ aryloxy” or “C₆₋₁₀arylthio” and the like, including but not limited to phenyloxy.

An “aralkyl” or “arylalkyl” is an aryl group connected, as asubstituent, via an alkylene group, such as “C₇₋₁₄ aralkyl” and thelike, including but not limited to benzyl, 2-phenylethyl,3-phenylpropyl, and naphthylalkyl. In some cases, the alkylene group isa lower alkylene group (i.e., a C₁₋₄ alkylene group).

As used herein, “heteroaryl” refers to an aromatic ring or ring system(i.e., two or more fused rings that share two adjacent atoms) thatcontain(s) one or more heteroatoms, that is, an element other thancarbon, including but not limited to, nitrogen, oxygen and sulfur, inthe ring backbone. When the heteroaryl is a ring system, every ring inthe system is aromatic. The heteroaryl group may have 5-18 ring members(i.e., the number of atoms making up the ring backbone, including carbonatoms and heteroatoms), although the present definition also covers theoccurrence of the term “heteroaryl” where no numerical range isdesignated. In some embodiments, the heteroaryl group has 5 to 10 ringmembers or 5 to 7 ring members. The heteroaryl group may be designatedas “5-7 membered heteroaryl,” “5-10 membered heteroaryl,” or similardesignations. Examples of heteroaryl rings include, but are not limitedto, furyl, thienyl, phthalazinyl, pyrrolyl, oxazolyl, thiazolyl,imidazolyl, pyrazolyl, isoxazolyl, isothiazolyl, triazolyl,thiadiazolyl, pyridinyl, pyridazinyl, pyrimidinyl, pyrazinyl, triazinyl,quinolinyl, isoquinlinyl, benzimidazolyl, benzoxazolyl, benzothiazolyl,indolyl, isoindolyl, and benzothienyl.

As used herein, “cycloalkyl” means a fully saturated carbocyclyl ring orring system. Examples include cyclopropyl, cyclobutyl, cyclopentyl, andcyclohexyl.

As used herein, “heterocyclyl” means a non-aromatic cyclic ring or ringsystem containing at least one heteroatom in the ring backbone.Heterocyclyls may be joined together in a fused, bridged orspiro-connected fashion. Heterocyclyls may have any degree of saturationprovided that at least one ring in the ring system is not aromatic. Theheteroatom(s) may be present in either a non-aromatic or aromatic ringin the ring system. The heterocyclyl group may have 3 to 20 ring members(i.e., the number of atoms making up the ring backbone, including carbonatoms and heteroatoms), although the present definition also covers theoccurrence of the term “heterocyclyl” where no numerical range isdesignated. The heterocyclyl group may also be a medium sizeheterocyclyl having 3 to 10 ring members. The heterocyclyl group couldalso be a heterocyclyl having 3 to 6 ring members. The heterocyclylgroup may be designated as “3-6 membered heterocyclyl” or similardesignations. In preferred six membered monocyclic heterocyclyls, theheteroatom(s) are selected from one up to three of O, N or S, and inpreferred five membered monocyclic heterocyclyls, the heteroatom(s) areselected from one or two heteroatoms selected from O, N, or S. Examplesof heterocyclyl rings include, but are not limited to, azepinyl,acridinyl, carbazolyl, cinnolinyl, dioxolanyl, imidazolinyl,imidazolidinyl, morpholinyl, oxiranyl, oxepanyl, thiepanyl, piperidinyl,piperazinyl, dioxopiperazinyl, pyrrolidinyl, pyrrolidonyl,pyrrolidionyl, 4-piperidonyl, pyrazolinyl, pyrazolidinyl, 1,3-dioxinyl,1,3-dioxanyl, 1,4-dioxinyl, 1,4-dioxanyl, 1,3-oxathianyl,1,4-oxathiinyl, 1,4-oxathianyl, 2H-1,2-oxazinyl, trioxanyl,hexahydro-1,3,5-triazinyl, 1,3-dioxolyl, 1,3-dioxolanyl, 1,3-dithiolyl,1,3-dithiolanyl, isoxazolinyl, isoxazolidinyl, oxazolinyl, oxazolidinyl,oxazolidinonyl, thiazolinyl, thiazolidinyl, 1,3-oxathiolanyl, indolinyl,isoindolinyl, tetrahydrofuranyl, tetrahydropyranyl,tetrahydrothiophenyl, tetrahydrothiopyranyl, tetrahydro-1,4-thiazinyl,thiamorpholinyl, dihydrobenzofuranyl, benzimidazolidinyl, andtetrahydroquinoline.

As used herein, “acyl” refers to —C(═O)R, wherein R is hydrogen, C₁₋₆alkyl, C₂₋₆ alkenyl, C₂₋₆ alkynyl, C₃₋₇ carbocyclyl, C₆₋₁₀ aryl, 5-10membered heteroaryl, and 5-10 membered heterocyclyl, as defined herein.Non-limiting examples include formyl, acetyl, propanoyl, benzoyl, andacryl.

An “O-carboxy” group refers to a “—OC(═O)R” group in which R is selectedfrom hydrogen, C₁₋₆ alkyl, C₂₋₆ alkenyl, C₂₋₆ alkynyl, C₃₋₇ carbocyclyl,C₆₋₁₀ aryl, 5-10 membered heteroaryl, and 5-10 membered heterocyclyl, asdefined herein.

A “C-carboxy” group refers to a “—C(═O)OR” group in which R is selectedfrom hydrogen, C₁₋₆ alkyl, C₂₋₆ alkenyl, C₂₋₆ alkynyl, C₃₋₇ carbocyclyl,C₆₋₁₀ aryl, 5-10 membered heteroaryl, and 5-10 membered heterocyclyl, asdefined herein. A non-limiting example includes carboxyl (i.e.,—C(═O)OH).

A “cyano” group refers to a “—CN” group.

An “S-sulfonamido” group refers to a “—SO₂NR_(A)R_(B)” group in whichR_(A) and R_(B) are each independently selected from hydrogen, C₁₋₆alkyl, C₂₋₆ alkenyl, C₂₋₆ alkynyl, C₃₋₇ carbocyclyl, C₆₋₁₀ aryl, 5-10membered heteroaryl, and 5-10 membered heterocyclyl, as defined herein.

An “N-sulfonamido” group refers to a “—N(R_(A))SO₂R_(B)” group in whichR_(A) and R_(b) are each independently selected from hydrogen, C₁₋₆alkyl, C₂₋₆ alkenyl, C₂₋₆ alkynyl, C₃₋₇ carbocyclyl, C₆₋₁₀ aryl, 5-10membered heteroaryl, and 5-10 membered heterocyclyl, as defined herein.

An “O-carbamyl” group refers to a “—OC(═O)NR_(A)R_(B)” group in whichR_(A) and R_(B) are each independently selected from hydrogen, C₁₋₆alkyl, C₂₋₆ alkenyl, C₂₋₆ alkynyl, C₃₋₇ carbocyclyl, C₆₋₁₀ aryl, 5-10membered heteroaryl, and 5-10 membered heterocyclyl, as defined herein.

An “N-carbamyl” group refers to an “—N(R_(A))OC(═O)R_(B)” group in whichR_(A) and R_(B) are each independently selected from hydrogen, C₁₋₆alkyl, C₂₋₆ alkenyl, C₂₋₆ alkynyl, C₃-7 carbocyclyl, C₆₋₁₀ aryl, 5-10membered heteroaryl, and 5-10 membered heterocyclyl, as defined herein.

An “O-thiocarbamyl” group refers to a “—OC(═S)NR_(A)R^(B)” group inwhich R_(A) and R_(B) are each independently selected from hydrogen,C₁₋₆ alkyl, C₂₋₆ alkenyl, C₂₋₆ alkynyl, C₃₋₇ carbocyclyl, C₆₋₁₀ aryl,5-10 membered heteroaryl, and 5-10 membered heterocyclyl, as definedherein.

An “N-thiocarbamyl” group refers to an “—N(R_(A))OC(═S)R_(B)” group inwhich R_(A) and R_(B) are each independently selected from hydrogen,C₁₋₆ alkyl, C₂₋₆ alkenyl, C₂₋₆ alkynyl, C₃₋₇ carbocyclyl, C₆₋₁₀ aryl,5-10 membered heteroaryl, and 5-10 membered heterocyclyl, as definedherein.

A “C-amido” group refers to a “—C(═O)NR_(A)R_(B)” group in which R_(A)and R_(B) are each independently selected from hydrogen, C₁₋₆ alkyl,C₂₋₆ alkenyl, C₂₋₆ alkynyl, C₃₋₇ carbocyclyl, C₆₋₁₀ aryl, 5-10 memberedheteroaryl, and 5-10 membered heterocyclyl, as defined herein.

An “N-amido” group refers to a “—N(R_(A))C(═O)R_(B)” group in whichR_(A) and R_(B) are each independently selected from hydrogen, C₁₋₆alkyl, C₂₋₆ alkenyl, C₂₋₆ alkynyl, C₃₋₇ carbocyclyl, C₆₋₁₀ aryl, 5-10membered heteroaryl, and 5-10 membered heterocyclyl, as defined herein.

An “aminoalkyl” group refers to an amino group connected via an alkylenegroup.

An “alkoxyalkyl” group refers to an alkoxy group connected via analkylene group, such as a “C₂₋₈ alkoxyalkyl” and the like.

Where the compounds disclosed herein have at least one chiral center,they may exist as individual enantiomers and diastereomers or asmixtures of such isomers, including racemates. Separation of theindividual isomers or selective synthesis of the individual isomers isaccomplished by application of various methods which are well known topractitioners in the art. Unless otherwise indicated, all such isomersand mixtures thereof are included in the scope of the compoundsdisclosed herein.

The terms “immunogen” and “immunogenic” refer to substances capable ofeliciting, producing, or generating an immune response in an organism.

The term “conjugate” refers to any substance formed from the joiningtogether of two parts. Representative conjugates in accordance with someembodiments herein include those formed by the joining together of asmall molecule, such as the compound of Formula (I) or (II), and a largemolecule, such as a carrier or a polyamine polymer, particularlyprotein. In the conjugate the small molecule may be joined at one ormore active sites on the large molecule.

“Haptens” are partial or incomplete antigens. They are protein-freesubstances, mostly low molecular weight substances, which are notcapable of stimulating antibody formation, but which do react withantibodies. The latter are formed by coupling a hapten to a highmolecular weight immunogenic carrier and then injecting this coupledproduct, i.e., immunogen, into a human or animal subject.

The term “antibody” refers to a specific protein binding partner for anantigen and is any substance, or group of substances, which has aspecific binding affinity for an antigen to the exclusion of othersubstances. The generic term antibody subsumes polyclonal antibodies,monoclonal antibodies and antibody fragments.

An “immunogenic carrier,” as used herein, is an immunogenic substance,commonly a protein, that can join with a hapten, thereby enabling thesehapten derivatives to induce an immune response and elicit theproduction of antibodies that can bind specifically with these haptens.Among the immunogenic carrier substances are included proteins,glycoproteins, complex polyamino-polysaccharides, particles, and nucleicacids that are recognized as foreign and thereby elicit an immunologicresponse from the host. The polyamino-polysaccharides may be preparedfrom polysaccharides using any of the conventional means known for thispreparation.

Also various protein types may be employed as a poly(amino acid)immunogenic carrier. These types include albumins, serum proteins,lipoproteins, etc. Illustrative proteins include bovine serum albumin(BSA), keyhole limpet hemocyanin (KLH), egg ovalbumin, bovinethyroglobulin (BTG) etc. Alternatively, synthetic poly(amino acids) maybe utilized. In some embodiments, KLH is used as an immunogenic carrier.

Immunogenic carriers can also include poly amino-polysaccharides, whichare high molecular weight polymers built up by repeated condensations ofmonosaccharides. Examples of polysaccharides are starches, glycogen,cellulose, carbohydrate gums such as gum arabic, agar, and so forth. Thepolysaccharides may also contain polyamino acid residues and/or lipidresidues.

The immunogenic carrier can also be a poly(nucleic acid) either alone orconjugated to one of the above mentioned poly(amino acids) orpolysaccharides.

The immunogenic carrier can also include solid particles. The particlesare generally at least about 0.02 microns (μm) and not more than about100 μm, and usually about 0.05 μm to 10 μm in diameter.

Cyclophosphamide Analogs

Some embodiments of the present application are directed to acyclophosphamide analog comprising a structure of Formula (I) or (II):

-   -   wherein R^(1a) is selected from hydrogen or —(CH₂)_(m)—X;    -   R^(2a) is —(CH₂)_(n)—Y;    -   R^(1b) is —(CH₂)_(m)—X;    -   each of R^(2b) and R^(2b′) is independently selected from is        —(CH₂)_(k)—Z;    -   each R^(3a), R^(4a), R^(5a), R^(3b), R^(4b) and R^(5b) is        independently selected from hydrogen, halogen, hydroxy, amino,        cyano, C₁-C₆ alkyl, C₂-C₆ alkenyl, C₂-C₆ alkynyl, C₃-C₇        cycloalkyl, 5-10 membered heterocyclyl, aryl, aralkyl, 5-10        membered heteroaryl, C₁-C₆ alkoxy, C₁-C₆ alkoxy(C₁-C₆)alkyl,        aryloxy, halo(C₁-C₆)alkyl, halo(C₁-C₆)alkoxy, C₁-C₆ alkylthio,        arylthio, amino(C₁-C₆)alkyl, nitro, O-carbamyl, N-carbamyl,        O-thiocarbamyl, N-thiocarbamyl, C-amido, N-amido, S-sulfonamido,        N-sulfonamido, C-carboxy, O-carboxy, acyl, and oxo (═O);    -   X is a functional group selected from amine, thiol, carboxylic        acid, hydrazide, hydrazine, oxime, or hydroxylamine;    -   Y is a functional group independently selected from halogen,        hydroxy, amine, thiol, carboxylic acid, hydrazide, hydrazine,        oxime, or hydroxylamine;    -   Z is selected from halogen or hydroxy; and    -   each m, n and k is independently an integer from 2 to 10.

In some embodiments of the compounds of Formula (I), R^(1a) is hydrogenand R^(2a) is —(CH₂)_(n)—Y. In some such embodiments, Y is a functionalgroup selected from amine, thiol, carboxylic acid, hydrazide, hydrazine,oxime, or hydroxylamine. In one embodiment, Y is thiol. In anotherembodiment, Y is carboxylic acid.

In some embodiments of the compounds of Formula (I), R^(1a) is—(CH₂)_(m)—X and X is selected from amine, thiol, carboxylic acid,hydrazide, hydrazine, oxime, or hydroxylamine. In one embodiment, X isthiol. In another embodiment, X is carboxylic acid In some suchembodiments, R^(2a) is —(CH₂)_(n)—Y and Y is selected from chloride orhydroxy.

In some embodiments of the compounds of Formula (II), R^(1b) is—(CH₂)_(m)—X and X is a functional group selected from amine, thiol,carboxylic acid, hydrazide, hydrazine, oxime, or hydroxylamine. In oneembodiment, Y is thiol. In another embodiment, Y is carboxylic acid. Insome such embodiments, each R^(2b) and R^(2b′) is —(CH₂)_(k)—Z and Z isselected from chloride or hydroxy.

In some embodiments of the compounds of Formula (I) or (II), m is aninteger of 2. In some other embodiments, m is an integer of 3.

In some embodiments of the compounds of Formula (I) or (II), n is aninteger of 2.

In some embodiments of the compounds of Formula (I) or (II), k is aninteger of 2.

In some embodiments of the compounds of Formula (I) or (II), each of thelinker group —(CH₂)_(m)—, —(CH₂)_(n)—, —(CH₂)_(k)— may be optionallysubstituted. Alternatively, one or more carbon atoms can be replacedwith one or more heteroatoms, such as O, S, or N.

In some embodiments of the compounds of Formula (I) or (II), at leastone of R^(3a), R^(4a), R^(5a), R^(3b), R^(4b) and R^(5b) is hydrogen. Insome preferred embodiments, each of R^(3a), R^(4a), R^(5a), R^(3b),R^(4b) and R^(5b) is hydrogen and the Formulae (I) and (II) arerepresented by Formulae (Ia) an (IIa):

Antibodies

Some embodiments include antibodies, and/or methods of makingantibodies. As used herein, “antibody” refers to full-size antibodies,and unless stated otherwise, antigen-binding fragments thereof.Antigen-binding fragments of antibodies can be formatted into a varietyof protein formats according to embodiments herein. Antigen-bindingfragments of antibodies, or “antibody fragments” as used herein includea portion of an intact antibody comprising the antigen binding site orvariable region of the intact antibody. Some antibody fragments are freeof the constant heavy chain domains (i.e. C_(H2), C_(H3), and H4,depending on antibody isotype) of the Fc region of the intact antibody,or a portion thereof. Examples of antibody fragments include, but arenot limited to Fab, Fab′, Fab′-SH, F(ab′).sub.2, and Fv fragments;minibodies; diabodies; any antibody fragment that is a polypeptidehaving a primary structure consisting of one uninterrupted sequence ofcontiguous amino acid residues (referred to herein as a “single-chainantibody fragment” or “single chain polypeptide”), including withoutlimitation (1) single-chain Fv (scFv) molecules (2) single chainpolypeptides containing only one light chain variable domain, or afragment thereof that contains the three CDRs of the light chainvariable domain, without an associated heavy chain moiety and (3) singlechain polypeptides containing only one heavy chain variable region, or afragment thereof containing the three CDRs of the heavy chain variableregion, without an associated light chain moiety; and multispecific ormultivalent structures formed from antibody fragments, for examplebispecific antibodies. In some embodiments, the antibody is monoclonal.In some embodiments, the antibody is chimeric. In some embodiments, theantibody is murine. In some embodiments, the antibody is rabbit. In someembodiments, the antibody is rat. In some embodiments, the antibody isgoat. In some embodiments, the antibody is guinea pig. In someembodiments, the antibody is donkey. In some embodiments, the antibodyis humanized. In some embodiments, the antibody is human.

Antibodies can be produced under in vivo, ex vivo, and/or in vitroconditions. The general structure of antibodies has been described, forexample, in U.S. Pat. No. 6,156,878, which is hereby incorporated byreference for its disclosure of antibody structure and for all purposes.Naturally-occurring antibodies or immunoglobulins are typicallytetramers of four covalently bound peptide chains. For example, an IgGantibody has two light chains and two heavy chains. Each light chain iscovalently bound to a heavy chain. In turn each heavy chain iscovalently linked to the other to form a “Y” configuration, also knownas an immunoglobulin conformation. Fragments of these molecules, or evenheavy or light chains alone, can bind antigen. Antibodies, fragments ofantibodies, and individual chains are also referred to herein asimmunoglobulins.

A normal naturally-occurring antibody heavy or light chain has anN-terminal (NH₂) variable (V) region and a C-terminal (—COOH) constant(C) region. The heavy chain variable region is referred to as V_(H)(including, for example, V_(gamma)), and the light chain variable regionis referred to as V_(L) (including V_(kappa) or V_(lambda)). Thevariable region is the part of the molecule that binds to the antibody'scognate antigen, while the Fc region (the second and third domains ofthe C region) determines the antibody's effector function (e.g.,complement fixation). Full-length immunoglobulin or antibody “lightchains” (generally about 25 kDa, about 214 amino acids) are encoded by avariable region gene at the N-terminus (generally about 110 amino acids)and a kappa or lambda constant region gene at the COOH-terminus.Full-length immunoglobulin or antibody “heavy chains” (generally about50 kDa, about 446 amino acids), are similarly encoded by a variableregion gene (generally encoding about 116 amino acids) and one of theconstant region genes, e.g., gamma (encoding about 330 amino acids).Typically, the “V_(L)” will include the portion of the light chainencoded by the V_(L) and/or J_(L) (J or joining region) gene segments,and the “V_(H)” will include the portion of the heavy chain encoded bythe V_(H) and/or D_(H) (D or diversity region) and J_(H) gene segments.See, generally, Roitt et al., Immunology (2d ed. 1989), Chapter 6 andPaul, Fundamental Immunology (Raven Press, 2d ed., 1989) (each of whichis incorporated by reference for all purposes).

An immunoglobulin light or heavy chain variable region consists of a“framework” region (“FR,” which also may be referred to herein as “FWR”)interrupted by three hypervariable regions, also calledcomplementarity-determining regions or CDRs. The CDRs are typicallyreferred to as CDR1, CDR2, and CDR3, numbered sequentially starting fromthe N-terminus. From N-terminal to C-terminal, both light and heavychains include domains FR1, CDR1, FR2, CDR2, FR3, CDR3 and FR4. Domainsof the heavy chain may be referred to herein as HFR1, HCDR1, HFR2,HCDR2, HFR3, HCDR3, and HFR4. Domains of the light chain may be referredto herein as LFR1, LCDR1, LFR2, LCDR2, LHFR3, LCDR3, and LFR4. Theextent of the framework region and CDRs have been defined (see Kabat etal. (1987), “Sequences of Proteins of Immunological Interest,” U.S.Department of Health and Human Services; Chothia et al., J. Mol. Biol.196:901-917 (1987) (each of which is incorporated by reference hereinfor all purposes). The sequences of the framework regions of differentlight or heavy chains are relatively conserved within a species. Theframework region of an antibody, that is the combined framework regionsof the constituent light and heavy chains, serves to position and alignthe CDRs in three dimensional space. The CDRs are primarily responsiblefor binding to an epitope of an antigen.

The constant region of the heavy chain molecule, also known as C_(H),determines the isotype of the antibody. Antibodies are referred to asIgM, IgD, IgG, IgA, and IgE depending on the heavy chain isotype. Theisotypes are encoded in the mu, delta, gamma, alpha, and epsilonsegments of the heavy chain constant region, respectively. In addition,there are a number of gamma subtypes. There are two types of lightchains, kappa and lambda. The determinants of these subtypes typicallyreside in the constant region of the light chain, also referred to asthe C_(L) in general, and C_(kappa) or C_(lambda) in particular.

The heavy chain isotypes can determine different effector functions ofthe antibody, such as opsonization or complement fixation. In addition,the heavy chain isotype determines the secreted form of the antibody.Secreted IgG, IgD, and IgE isotypes are typically found in single unitor monomeric form. Secreted IgM isotype is found in pentameric form;secreted IgA can be found in both monomeric and dimeric form. In someembodiments, an antibody as described herein, for example a monoclonalantibody, has an IgG1, IgG2, IgG3, IgG4, IgD, IgE, or IgM isotype.

As used herein, the terms, “specifically,” “selectively,” and the like,including variations of these root terms refer to an antibody that bindswith a higher degree to the indicated epitope than at least one othersubstance to which the antibody is exposed. For example, in someembodiments, the antibody can bind specifically to cyclophosphamide orifosfamide, but not to an acyclic metabolite thereof. In someembodiments, the antibody binds selectively to cyclophosphamide orifosfamide as described herein with a K_(d) numerically less than about10⁻⁶ M (in which a lower K_(d) indicates tighter binding), for example,less than about 10⁻⁶ M, 5×10⁻⁷ M, 10⁻⁷ M, 10⁻⁸ M, 10⁻⁹ M, 10⁻¹⁰ M, 10⁻¹¹M, 10⁻¹² M, 5×10⁻¹³ M, or 10⁻¹³M, including ranges between any two ofthe listed values, for example, 10⁻⁶ M to 10⁻¹³M, 10⁻⁶ M to 5×10⁻¹³ M,10⁻⁷ M to 10⁻¹³M, 10⁻⁷ M to 5×10⁻¹³ M, 10⁻⁸ M to 10⁻¹³M, 10⁻⁸ M to5×10⁻¹³ M, 10⁻⁹ M to 10⁻¹³M, or 10⁻⁹ M to 5×10⁻¹³ M. In someembodiments, the antibody binds to cyclophosphamide or ifosfamide with aK_(d) numerically less than about 10⁻⁶ M as described herein, and alsobinds to a conjugate of Formula (I) or Formula (II) as described herein.In some embodiments, the antibody specifically binds to cyclophosphamidewith a K_(d) numerically less than about 10⁻⁶ M, for example less thanabout 10⁻⁶ M, 5×10⁻⁷ M, 10⁻⁷ M, 10⁻⁸ M, 10⁻⁹ M, 10⁻¹⁰ M, 10⁻¹¹ M, 10⁻¹²M, 5×10⁻¹³ M, or 10⁻¹³M, including ranges between any two of the listedvalues and also binds to a conjugate of Formula (I) or Formula (II) asdescribed herein with K_(d) numerically less than about 10⁻⁶ M.

In some embodiments, the antibody binds specifically to cyclophosphamidewith a stronger dissociation coefficient (K_(d)) than to an acyclicmetabolite of cyclophosphamide, in which the K_(d) for cyclophosphamideis numerically less than about 1/10 the K_(d) for an acyclic metaboliteof cyclophosphamide, for example less than 1/10, 1/20, 1/50, 1/100,1/500, 1/1000, 1/5000, 1/10000, 1/50000, or 1/100000, including rangesbetween any two of the listed values. In a preferred embodiment, theacyclic metabolite of cyclophosphamide has the formula (III):

In some embodiments, the antibody further binds to a compound of Formula(I) that comprises a carrier covalently bound to Y as described herein.In some embodiments, the antibody further binds to a compound of Formula(I) that comprises a carrier covalently bound to X as described herein.In some further embodiments, the antibody further binds to a compound ofFormula (II) that comprises a carrier covalently bound to X as describedherein.

In some embodiments, the antibody binds specifically to ifosfamide witha stronger dissociation coefficient (K_(d)) than to an acyclicmetabolite of cyclophosphamide, in which the K_(d) for ifosfamide isnumerically less than about 1/10 the K_(d) for an acyclic metabolite ofcyclophosphamide, for example less than 1/10, 1/20, 1/50, 1/100, 1/500,1/1000, 1/5000, 1/10000, 1/50000, or 1/100000, including ranges betweenany two of the listed values, and in which the acyclic metabolite ofcyclophosphamide has the formula (III). In some embodiments, theantibody further binds to a compound of Formula (I) that comprises acarrier covalently bonded to Y as described herein. In some embodiments,the antibody further binds to a compound of Formula (I) that comprises acarrier covalently bound to X as described herein. In some embodiments,the antibody further binds to a compound of Formula (II) that comprisesa carrier covalently bonded to X as described herein.

Immunogen/Assay Conjugate

As discussed above, the functional groups of X or Y of thecyclophosphamide analog of Formula (I) or (II) can covalently bonded toa immunogenic polymer carrier to form an immunogen. Alternatively, thesefunctional groups can covalently bonded to the same polymer or carrierto form a conjugate, except that these polymers or carriers need notproduce an immunological response as needed for the immunogen. In oneembodiment, X or Y is a carboxylic acid group or active esters thereofthat can bond with an amino group of the carrier protein. In anotherembodiment, X or Y is a thiol group. In some embodiments, the polymercarrier is covalently bound to the cyclophosphamide analog of Formula(I) or Formula (II) by an amide bond. The amide bond can be formed byactivating a carboxylic acid moiety of X or Y by reacting the carboxylgroup with a leaving group reagent (e.g., N-hydroxysuccinimide,1-hydroxybenzotriazole, p-nitro phenol and the like). An activatingreagent such as dicyclohexylcarbodiimide, diisopropylcarbodiimide, orthe like can be used. The activated form of the carboxyl group then canbe reacted with a buffered solution containing the polymer carrier, forexample a polypeptide. Alternatively, the amide bond can be formed byreacting the amine moiety of X or Y with an activated carboxylic acidmoiety of the polymer carrier.

In some embodiments, the polymer carrier is covalently bound to thecyclophosphamide analog of Formula (I) or Formula (II) by a thioether(—S—) bond. The thioether bond can be formed by crosslinking of thethiol moiety of X or Y with an activated or modified amine group of thepolymer carrier, for example, those containing maleimide oriodoacetamide moiety. Alternatively, the thioether bond can be formed byreacting the thiol moiety of X or Y with an activated or modifiedcarboxylic acid group of the polymer carrier to form thioester. Atypical coupling agent such as N,N′-Dicyclohexylcarbodiimide (DCC) maybe used in the reaction. In some embodiments, a polypeptide carrier iscovalently bonded to the cyclophosphamide analog of Formula (I) orFormula (II) via a maleimide chemistry, in which one or more lysineresidues of the carrier are converted to sulfhydryl-reactive maleimidegroups, and the polypeptide carrier is bonded to the cyclophosphamideanalog at a sulfhydryl (—SH) group.

Non-limiting exemplary immunogens or conjugates prepared from thecyclophosphamide analogs of Formula (I) are illustrated below:

Where, with reference to Formula (I) or (Ia), R^(1a) is hydrogen, and Y(with reference to R^(2a)) is thiol or carboxylic acid conjugated with acarrier protein; or

Where, with reference to Formula (I) or (Ia), X (with reference toR^(1a)) is thiol or carboxylic acid conjugated with a carrier protein,and R^(2a) is —(CH₂)₂R (where R corresponds to Y in the definition ofR^(2a) of Formula (I) or (Ia), and R can be selected from chloro orhydroxy).

Furthermore, non-limiting exemplary immunogens or conjugates preparedfrom the cyclophosphamide analogs of Formula (II) are illustrated below:

Where, with reference to Formula (II) or (IIa), X (with reference toR^(1b)) is thiol or carboxylic acid conjugated with a carrier protein,and each R^(2b) and R^(2b′) is independently —(CH₂)₂R (where Rcorresponds to Z in the definition of R^(2b) and R^(2b′) of Formula (II)or (IIa), and R can be selected from chloro or hydroxy).

In some embodiments, the compound of Formula (I) is conjugated to acarrier comprising, consisting or, or consisting essentially of: analbumin or fragment thereof, a serum protein, a lipoprotein, bovineserum albumin (BSA), keyhole limpet hemocyanin (KLH), egg ovalbumin,bovine thyroglobulin (BTG), a synthetic poly(amino acids), a polyamino-polysaccharide, a poly nucleic acid, a poly amino acid, apolysaccharide, or a solid particle (such a compound conjugated to acarrier may also be referred to herein as a “conjugate,” includingvariations of this root term). The carrier can be covalently bonded toeither Y or X, as described herein. In some embodiments, the compound ofFormula (I) is conjugated to a carrier comprising, consisting or, orconsisting essentially of KLH.

In some embodiments, the compound of Formula (II) is conjugated to acarrier comprising, consisting or, or consisting essentially of: analbumin or fragment thereof, a serum protein, a lipoprotein, bovineserum albumin (BSA), keyhole limpet hemocyanin (KLH), egg ovalbumin,bovine thyroglobulin (BTG), a synthetic poly(amino acids), a polyamino-polysaccharide, a poly nucleic acid, a poly amino acid, apolysaccharide, or a solid particle (such a compound conjugated to acarrier may also be referred to herein as a “conjugate,” includingvariations of this root term). The carrier can be covalently bound to X.In some embodiments, the compound of Formula (II) is conjugated to acarrier comprising, consisting or, or consisting essentially of KLH.

In some embodiments, the conjugate of the carrier with the compound ofFormula (I) or (II), alone or in combination with the antibody generatedfrom the immunogens formed from the immunogenic proteins conjugated withthe compound of Formula (I) or (II), can be utilized as immunoassayreagents for determining the presence of cyclophosphamide and/orifosfamide in a samples.

In addition, assay components of the present application can be providedin a kit. The kit can also contain as an additional reagent and/oradditives such as ancillary reagents may be included, for example,stabilizers, buffers and the like. The relative amounts of the variousreagents may vary widely to provide for concentrations in solution ofthe reagents which substantially optimize the sensitivity of the assay.Reagents can be provided in solution or as a dry powder, usuallylyophilized, including excipients which on dissolution will provide fora reagent solution having the appropriate concentrations for performingthe assay.

Methods of Making Antibodies

In some embodiments, methods of making antibodies that bind tocyclophosphamide or ifosfamide are described. The method can compriseproviding an immunogen comprising a compound of Formula (I) or Formula(II) conjugated to a carrier as described herein. The method cancomprise immunizing a host organism with the immunogen. The method cancomprise isolating antibody-producing cells from the host organism. Themethod can comprise screening the antibody-producing cells from the hostorganism for antibodies that binds specifically to a compound of Formula(I) or Formula (II), for example cyclophosphamide or ifosfamide.

Suitable antibodies can be produced using a variety of differenttechniques. In some embodiments, a non-human host, for example a mouse,rat, guinea pig, rabbit, goat, sheep, donkey, horse, or camel isimmunized with antigen such as conjugated cyclophosphamide or ifosfamideas described herein. In some embodiments, the host organism comprisesits endogenous immunoglobulin genes. In some embodiments, the hostorganism is genetically modified so as to comprise one or moreimmunoglobulin genes of a different organism, for example a human. Insome embodiments, the host organisms is genetically modified so as tocomprise one or more human immunoglobulin genes, and further does nothave any substantial host immunoglobulin gene activity (for example, ifthe host has had its immunoglobulin genes deleted, transcriptionallysilenced, mutated, or otherwise inactivated). In some embodiments, theantigen is delivered at least one of intravenously, subcutaneously orintramuscularly as described herein. In some embodiments, the antigen isdelivered on a dosing schedule.

In some embodiments, for example when monoclonal antibodies are ofinterest, a host animal is immunized with an immunogen as describedherein, and antibody-producing cells can be recovered from the hostanimal, immortalized, and screened for antibodies that specifically bindto the cyclophosphamide or ifosfamide (see, Harlow & Lane, Antibodies, ALaboratory Manual Second Edition (C.S.H.P. NY, 2014), which is herebyincorporated by reference in its entirety. Typically, antibody-producingcells comprise B cells, though another type of antibody-producing cell,the V cell, has also been described in WO 2010/002883 (herebyincorporated by reference in its entirety), and is also contemplated asa suitable antibody-producing cell in some embodiments. In someembodiments, the immunogen comprises the compound of Formula (I)conjugated to a carrier comprising, consisting or, or consistingessentially of: an albumin or fragment thereof, a serum protein, alipoprotein, bovine serum albumin (BSA), keyhole limpet hemocyanin(KLH), egg ovalbumin, bovine thyroglobulin (BTG), a synthetic poly(aminoacids), a poly amino-polysaccharide, a poly nucleic acid, a poly aminoacid, a polysaccharide, or a solid particle. The carrier can becovalently bound to Y. In some embodiments, the compound of Formula (I)is conjugated to a carrier comprising, consisting or, or consistingessentially of KLH, and is covalently bonded to Y. In some embodiments,the compound of Formula (I) is conjugated to a carrier comprising,consisting or, or consisting essentially of KLH, and is covalentlybonded to X. In some embodiments, the immunogen comprises the compoundof Formula (II) conjugated to a carrier comprising, consisting or, orconsisting essentially of: an albumin or fragment thereof, a serumprotein, a lipoprotein, bovine serum albumin (BSA), keyhole limpethemocyanin (KLH), egg ovalbumin, bovine thyroglobulin (BTG), a syntheticpoly(amino acids), a poly amino-polysaccharide, a poly nucleic acid, apoly amino acid, a polysaccharide, or a solid particle. The carrier canbe covalently bound to X. In some embodiments, the compound of Formula(II) is conjugated to a carrier comprising, consisting or, or consistingessentially of KLH and is covalently bonded to Y. In some embodiments,the host organism is boosted with one or more additional administrationof the compound, for example, at least 1, 2, 3, 4, or 5 additionaladministrations, including ranges between any two of the listed values.

Antibody-producing cells can be harvested from the host organism andisolated using conventional means, for example flow cytometry, or afluorescence activated cell sorting (FACS™) technique. In someembodiments, the isolated antibody-producing cells are immortalized, asdescribed herein, for example using hybridoma technology. In someembodiments, nucleic acids encoding antibodies are isolated from theantibody-producing cells, and screened for antibodies with suitableaffinity to cyclophosphamide and/or ifosfamide.

In some embodiments, the antibody-producing host cells are immortalizedusing hybridoma technology. Hybridoma techniques are well known in theart. A host animal is typically injected with the antigen, and, after aperiod of time, antibody-making cell can be isolated, usually from thespleen. The antibody-making cell can be fused with myeloma (or otherimmortalized cell) cells to provide fused cells, referred to ashybridomas. The hybridomas can be separated from unfused antibody-makingcells and myeloma cells. Specific hybridomas can be isolated and testedto confirm that the isolated hybridoma produces antibody specific forthe antigen used in the immunization step. The hybridoma so producedcombines the ability of the parent antibody-making cell to produce aspecific single antibody with the ability of its parent myeloma (orother immortalized) cell to continually grow and divide, either in vitroas a cell culture or in vivo as a tumor after injection into theperitoneal cavity of an animal. Hybridoma lines can be used, for exampleto produce monoclonal antibodies. Immortalized antibody-producing cellscan be screened for antibodies that bind specifically to thecyclophosphamide or ifosfamide as described herein. For example,supernatants from the immortalized antibody-producing cells can bescreened for the presence of antibodies that bind to thecyclophosphamide or ifosfamide. In some embodiments, the supernatantsare screened using an Enzyme-Linked Immunosorbent Assay (ELISA). Forexample, the cyclophosphamide or ifosfamide can be immobilized on asubstrate, incubated with supernatant from the immortalizedantibody-producing cell, the substrate can be washed of the supernatant,and the presence of antibody bound to the immobilized cyclophosphamideor ifosfamide can be detected, for example using a secondary assay. Insome embodiments, the supernatants are screened using a no-wash assay.For example, the cyclophosphamide or ifosfamide can be directly orindirectly labeled, for example using a first fluorophore of a FRETpair, contacted with supernatant, and the presence of antibodies boundto the cyclophosphamide or ifosfamide can be detected in solution, forexample using a secondary antibody comprising a label such as the secondfluorophore of a FRET pair (so as to detect proximity of the secondaryantibody to the cyclophosphamide or ifosfamide). In some embodiments,the antibodies are further screened for superior affinity tocyclophosphamide or ifosfamide than an acyclic metabolite thereof, forexample an acyclic metabolite of cyclophosphamide of formula (III) (byway of example, a superior affinity can K_(d) be identified as anaffinity to cyclophosphamide of ifosfamide that is numerically less thanabout 1/10 than the K_(d) to the acyclic metabolite).

Another approach in accordance with some embodiments is to isolatenucleic acid sequences, such as DNA sequences or RNA sequences from anantibody-producing cell, and then screening for an antibody havingsuitable binding characteristics to the cyclophosphamide or ifosfamideas described herein. In some embodiments, the nucleic acids are clonedand, then clones are screened for nucleic acids which encode an antibodyhaving suitable binding characteristics to the cyclophosphamide orifosfamide as described herein. An example protocol for screening humanB cell nucleic acids is described in Huse et al., Science 246:1275-1281(1989), which is hereby incorporated by reference. In some embodiments,nucleic acids of interest are identified using phage display technology.See, e.g., Dower et al., WO 91/17271 and McCafferty et al., WO 92/01047.Phage display technology can also be used to mutagenize variable regions(or portions thereof such as CDRs) of antibodies previously shown tohave affinity for cyclophosphamide or ifosfamide, and screen forantibodies with greater binding affinity. In some embodiments, thenucleic acids are sequenced.

Isolated oligonucleotides encoding a desired antibody of interest can beexpressed in an expression system, for example a cellular expressionsystem or a cell-free system. Exemplary cellular expression systemsinclude yeast (e.g., mammalian cells, E. coli, insect cells,Saccharomyces, Pichia) transformed with recombinant yeast expressionvectors containing the nucleotide sequences encoding antibodies; insectcell systems infected with recombinant virus expression vectors (e.g.,baculovirus) containing sequences encoding antibodies; plant cellsystems infected with recombinant virus expression vectors (e.g.,cauliflower mosaic virus, CaMV; tobacco mosaic virus, TMV) ortransformed with recombinant plasmid expression vectors (e.g., Tiplasmid) containing nucleotide sequences encoding antibodies; mammaliancell systems (e.g., COS, CHO, BHK, 293, 3T3) harboring recombinantexpression constructs containing promoters derived from the genome ofmammalian cells (e.g., metallothionein promoter) or from mammalianviruses. Exemplary cell free systems include E. coli extracts and yeastextracts. The extracts can be lysates. The extracts can be purified, forexample, to enrich for ribosomes and/or to remove undesired materialssuch as debris or host genomic DNA. Nucleic acids encoding antibodies incell-free systems can include plasmid DNA, linear DNA, or RNA.

In some embodiments, for example when polyclonal antibodies are ofinterest, a host animal is immunized with an immunogen as describedherein, and serum of the host animal is obtained, and polyclonalantibodies against cyclophosphamide or ifosfamide are affinity purified,for example using affinity chromatography. For example, in affinitychromatography, the antigen of interest, such as cyclophosphamide orifosfamide can be bound to a substrate in a column, and the serum can bepassed through the column, so that antibody with affinity to thecyclophosphamide or ifosfamide is immobilized in the column. The columncan be washed one or more times to remove non-specific antibody andother substances, and then antibody with affinity to thecyclophosphamide or ifosfamide can be eluted from the column (see, e.g.,Harlow & Lane, Antibodies, A Laboratory Manual Second Edition (C.S.H.P.NY, 2014).

In addition to the items above, a number of options are set forthherein: Option 1 comprises a compound comprising a structure of Formula(I) or (II):

in which R^(1a) is selected from hydrogen or —(CH₂)_(m)—X; R^(2a) is—(CH₂)_(n)—Y; R^(1b) is —(CH₂)_(m)—X; each R^(2b) and R^(2b′) isindependently selected from is —(CH₂)_(k)—Z; each R^(3a), R^(4a),R^(5a), R^(3b), R^(4b) and R^(5b) is independently selected fromhydrogen, halogen, hydroxy, amino, cyano, C₁-C₆ alkyl, C₂-C₆ alkenyl,C₂-C₆ alkynyl, C₃-C₇ cycloalkyl, 5-10 membered heterocyclyl, aryl,aralkyl, 5-10 membered heteroaryl, C₁-C₆ alkoxy, C₁-C₆alkoxy(C₁-C₆)alkyl, aryloxy, halo(C₁-C₆)alkyl, halo(C₁-C₆)alkoxy, C₁-C₆alkylthio, arylthio, amino(C₁-C₆)alkyl, nitro, O-carbamyl, N-carbamyl,O-thiocarbamyl, N-thiocarbamyl, C-amido, N-amido, S-sulfonamido,N-sulfonamido, C-carboxy, O-carboxy, acyl, and oxo (═O); X is afunctional group selected from amine, thiol, carboxylic acid, hydrazide,hydrazine, oxime, or hydroxylamine; Y is a functional groupindependently selected from halogen, hydroxy, amine, thiol, carboxylicacid, hydrazide, hydrazine, oxime, or hydroxylamine; Z is selected fromhalogen or hydroxy; and each m, n and k is independently an integer from2 to 10. Option 2 comprises the compound of Option 1, wherein R^(1a) ishydrogen. Option 3 comprises the compound of Option 2, wherein Y isselected from amine, thiol, carboxylic acid, hydrazide, hydrazine,oxime, or hydroxylamine. Option 4 comprises the compound of Option 1,wherein R^(1a) is —(CH₂)_(m)—X. Option 5 comprises the compound ofOption 4, wherein Y is selected from chloride or hydroxy. Option 6comprises the compound of Option 1, wherein each R^(2b) and R^(2b′) is—(CH₂)_(k)—Z and Z is selected from chloride or hydroxy. Option 7comprises the compound of any one of Options 1 to 6, wherein m is aninteger of 2. Option 8 comprises the compound of any one of Options 1 to6, wherein m is an integer of 3. Option 9 comprises the compound of anyone of Options 1 to 8, wherein each n and k is an integer of 2. Option10 comprises the compound of any one of Options 1 to 9, wherein eachR^(3a), R^(4a), R^(5a), R^(3b), R^(4b), R^(5b) is hydrogen. Option 11comprises an immunogen comprising a compound of any one Options 1 to 10covalently bonded to an immunogenic polymer or carrier through thefunctional groups X or Y of the compound. Option 12 comprises theimmunogen of Option 11, wherein the immunogenic polymer or carrier isselected from an immunologically active protein or polypeptide. Option13 comprises an antibody which substantially selectively binds tocyclophosphamide and/or ifosfamide. Option 14 comprises the antibody ofoption 13, wherein said antibody is derived from an immunogen of Options11 or 12.

Option 15 comprises an immunoassay for detecting in a sample thepresence of cyclophosphamide or ifosfamide in a sample, comprising anassay conjugate, wherein said assay conjugate comprising a compound ofany one Options 1 to 10 covalently bonded to a carrier through thefunctional groups X or Y of the compound. Option 16 comprises animmunoassay of Option 15, wherein the carrier is selected from a proteinor polypeptide.

Option 17 comprises an immunoassay for detecting in a sample thepresence of cyclophosphamide and/or ifosfamide in a sample, comprisingthe antibody of Option 13 or 14.

Option 18 comprises a kit for detecting the presence of cyclophosphamideand/or ifosfamide in a sample comprising reagents, one of the reagentsbeing a conjugate of a carrier covalently bonded to a compound of anyone Options 1 to 10 through the functional groups X or Y of thecompound. Option 19 comprises the kit of Option 18, wherein the carrieris selected from a protein or polypeptide. Option 20 comprises the kitof Option 18 or 19, further comprising the antibody of Option 13 or 14.Option 21 comprises the compound of any one of options 1-10, furthercomprising a carrier covalently bound to X, wherein the carriercomprises at least one of an albumin or fragment thereof, a serumprotein, a lipoprotein, bovine serum albumin (BSA), keyhole limpethemocyanin (KLH), egg ovalbumin, bovine thyroglobulin (BTG), a syntheticpoly(amino acids), a poly amino-polysaccharide, a poly nucleic acid, apoly amino acid, a polysaccharide, or a solid particle.

Option 22 comprises the compound of any one of options 1-10 or 21,further comprising a carrier covalently bound to Y, wherein the carriercomprises at least one of an albumin or fragment thereof, a serumprotein, a lipoprotein, bovine serum albumin (BSA), keyhole limpethemocyanin (KLH), egg ovalbumin, bovine thyroglobulin (BTG), a syntheticpoly(amino acids), a poly amino-polysaccharide, a poly nucleic acid, apoly amino acid, a polysaccharide, or a solid particle.

Option 23 comprises an antibody that binds specifically to the compoundof any one of options 21-22. Option 24 comprises an antibody of option23, wherein the antibody binds to a cyclic cyclophosphamide with adissociation constant (K_(d)) that is numerically less than 1/10 thedissociation constant for acyclic cyclophosphamide of formula (III).Option 25 comprises the antibody of option 24, wherein the antibodybinds to a cyclic cyclophosphamide with a dissociation constant (K_(d))that is numerically less than 1/1000 the dissociation constant foracyclic cyclophosphamide of formula (III). Option 26 comprises theantibody of any one of options 23-25, wherein the antibody comprises amonoclonal antibody. Option 27 comprises the antibody of any one ofoptions 23-25, wherein the antibody comprises a polyclonal antibody.

Option 28 comprises a method of making an antibody that bindsspecifically to cyclophosphamide, the method comprising: administeringthe immunogen of any of options 11-12 or the compound of any one ofoptions 21-22 to a host organism; isolating antibody-producing cells orantibodies from the host organism; and screening antibodies derived fromthe antibody-producing cells or the antibodies from the host organismfor affinity to cyclophosphamide. Option 29 comprises the method ofoption 28, wherein the host organism comprises a mouse, rat, hamster,guinea pig, rabbit, donkey, or goat. Option 30 comprises the method ofany one of options 28-29, wherein the carrier comprises KLH. Option 31comprises the method of any one of options 28-29, wherein theantibody-producing cells are isolated, wherein antibodies derived fromthe antibody-producing cells are screened for affinity tocyclophosphamide, and wherein the antibody that binds specifically tocyclophosphamide is monoclonal. Option 32 comprises the method of option31, further comprising constructing hybridomas from the isolatedantibody-producing cells. Option 33 comprises the method of option 31 or32, further comprising screening nucleic acids from the isolatedantibody-producing cells by phage display. Option 34 comprises themethod of any one of options 28-33, further comprising screening forantibodies that bind specifically to cyclophosphamide compared to anacyclic metabolite of formula (III). Option 35 comprises the method ofany one of options 31-34, further comprising expressing a nucleic acidencoding the antibody in a host cell. Option 36 comprises the method ofany one of options 28-29, wherein the antibodies from the host organismare screened for affinity to cyclophosphamide, and wherein the antibodythat binds specifically to cyclophosphamide is polyclonal.

Option 37 comprises the method of making an antibody that bindsspecifically to ifosfamide, the method comprising: administering theimmunogen of any of options 11-12 or the compound of any one of options21-22 to a host organism; isolating antibody-producing cells orantibodies from the host organism; and screening antibodies derived fromthe antibody-producing cells or the antibodies from the host organismfor affinity to ifosfamide. Option 38 comprises the method of option 37,wherein the host organism comprises a mouse, rat, hamster, guinea pig,rabbit, donkey, or goat. Option 39 comprises the method of any one ofoptions 37-38, wherein the carrier comprises KLH. Option 40 comprisesthe method of any one of options 37-39, wherein the antibody-producingcells are isolated, wherein antibodies derived from theantibody-producing cells are screened for affinity to ifosfamide, andwherein the antibody that binds specifically to cyclophosphamide ismonoclonal. Option 41 comprises the method of option 40, furthercomprising constructing hybridomas from the isolated antibody-producingcells. Option 42 comprises the method of option 40 or 41, furthercomprising screening nucleic acids from the isolated antibody-producingcells by phage display. Option 43 comprises the method of any one ofoptions 37-42, further comprising screening for antibodies that bindspecifically to cyclophosphamide compared to an acyclic metabolite offormula (III). Option 44 comprises the method of any one of options40-43, further comprising expressing a nucleic acid encoding theantibody in a host cell. Option 45 comprises the method of any one ofoptions 37-39, wherein the antibodies from the host organism arescreened for affinity to cyclophosphamide, and wherein the antibody thatbinds specifically to cyclophosphamide is polyclonal.

Example I

A compound of Formula (II), in which X is covalently bonded to KLH issynthesized, to prepare a conjugate, as shown:

in which the protein is KLH. In particular, a maleimide-activated KLHprotein is covalently bonded to the thiol group of R^(1b) to form theconjugate shown in Formula (IV) in which the “protein” comprises KLH.

The conjugate is injected into a BALB/c mouse host by intramuscularinjection, and incubated for 5 days, and then the mouse host is boostedby a second administration of the conjugate. B cells are harvested fromthe mouse host, and B cell clones are fused with myeloma cells toconstruct hybridomas. Hybridomas are cultured, and supernatants arecollected. The supernatants are screened using an ELISA assay toidentify hybridomas with affinity to ifosfamide. Those hybridomas areexpanded, and DNAs coding antibody variable regions are sequenced so asto obtain the variable region sequences of monoclonal antibodies withaffinity to cyclophosphamide. Monoclonal antibodies are constructed, andare further screened for specificity to cyclophosphamide over theacyclic metabolite of formula (III).

Example II

A compound of Formula (I), in which Y is covalently bound to human serumalbumin via a thiol-selective coupling reaction, to prepare a conjugate,as shown:

in which the protein is human serum albumin.

The conjugate is injected into a rabbit host by intramuscular injection,and incubated for 7 days, and then the rabbit host is boosted by asecond administration of the conjugate. Immune serum from the rabbit isthen collected. The serum is affinity purified for immunoglobulins thatbind specifically to ifosfamide using affinity chromatography in whichifosfamide is immobilized on the solid phase. The column is washed, andthen antibody with affinity to ifosfamide is eluted from the column, soas to obtain polyclonal antibody with affinity to ifosfamide.

What is claimed is:
 1. A compound comprising a structure of Formula (I)or (II):

wherein R^(1a) is selected from hydrogen or —(CH₂)_(m)—X; R^(2a) is—(CH₂)_(n)—Y; R^(1b) is —(CH₂)_(m)—X; each R^(2b) and R^(2b′) isindependently selected from is —(CH₂)_(k)—Z; each R^(3a), R^(4a),R^(5a), R^(3b), R^(4b) and R^(5b) is independently selected fromhydrogen, halogen, hydroxy, amino, cyano, C₁-C₆ alkyl, C₂-C₆ alkenyl,C₂-C₆ alkynyl, C₃-C₇ cycloalkyl, 5-10 membered heterocyclyl, aryl,aralkyl, 5-10 membered heteroaryl, C₁-C₆ alkoxy, C₁-C₆alkoxy(C₁-C₆)alkyl, aryloxy, halo(C₁-C₆)alkyl, halo(C₁-C₆)alkoxy, C₁-C₆alkylthio, arylthio, amino(C₁-C₆)alkyl, nitro, O-carbamyl, N-carbamyl,O-thiocarbamyl, N-thiocarbamyl, C-amido, N-amido, S-sulfonamido,N-sulfonamido, C-carboxy, O-carboxy, acyl, and oxo (═O); X is afunctional group selected from amine, thiol, carboxylic acid, hydrazide,hydrazine, oxime, or hydroxylamine; Y is a functional groupindependently selected from halogen, hydroxy, amine, thiol, carboxylicacid, hydrazide, hydrazine, oxime, or hydroxylamine; Z is selected fromhalogen or hydroxy; and each m, n and k is independently an integer from2 to
 10. 2. The compound of claim 1, wherein R^(1a) is hydrogen.
 3. Thecompound of claim 2, wherein Y is selected from amine, thiol, carboxylicacid, hydrazide, hydrazine, oxime, or hydroxylamine.
 4. The compound ofclaim 1, wherein R^(1a) is —(CH₂)_(m)—X.
 5. The compound of claim 4,wherein Y is selected from chloride or hydroxy.
 6. The compound of claim1, wherein each R^(2b) and R^(2b′) is —(CH₂)_(k)—Z and Z is selectedfrom chloride or hydroxy.
 7. The compound of any one of claims 1 to 6,wherein m is an integer of
 2. 8. The compound of any one of claims 1 to6, wherein m is an integer of
 3. 9. The compound of any one of claims 1to 8, wherein each n and k is an integer of
 2. 10. The compound of anyone of claims 1 to 9, wherein each R^(3a), R^(4a), R^(5a), R^(3b),R^(4b), R^(5b) is hydrogen.
 11. An immunogen comprising a compound ofany one claims 1 to 10 covalently bonded to an immunogenic polymer orcarrier through the functional groups X or Y of the compound.
 12. Theimmunogen of claim 11, wherein the immunogenic polymer or carrier isselected from an immunologically active protein or polypeptide.
 13. Anantibody which substantially selectively binds to cyclophosphamideand/or ifosfamide.
 14. The antibody of claim 13, wherein said antibodyis derived from an immunogen of claims 11 or
 12. 15. An immunoassay fordetecting in a sample the presence of cyclophosphamide or ifosfamide ina sample, comprising an assay conjugate, wherein said assay conjugatecomprising a compound of any one claims 1 to 10 covalently bonded to acarrier through the functional groups X or Y of the compound.
 16. Theimmunoassay of claim 15, wherein the carrier is selected from a proteinor polypeptide.
 17. An immunoassay for detecting in a sample thepresence of cyclophosphamide and/or ifosfamide in a sample, comprisingthe antibody of claim 13 or
 14. 18. A kit for detecting the presence ofcyclophosphamide and/or ifosfamide in a sample comprising reagents, oneof the reagents being a conjugate of a carrier covalently bonded to acompound of any one claims 1 to 10 through the functional groups X or Yof the compound.
 19. The kit of claim 18, wherein the carrier isselected from a protein or polypeptide.
 20. The kit of claim 18 or 19,further comprising the antibody of claim 13 or
 14. 21. The compound ofany one of claims 1-10, further comprising a carrier covalently bound toX, wherein the carrier comprises at least one of an albumin or fragmentthereof, a serum protein, a lipoprotein, bovine serum albumin (BSA),keyhole limpet hemocyanin (KLH), egg ovalbumin, bovine thyroglobulin(BTG), a synthetic poly(amino acids), a poly amino-polysaccharide, apoly nucleic acid, a poly amino acid, a polysaccharide, or a solidparticle.
 22. The compound of any one of claims 1-10 or 21, furthercomprising a carrier covalently bound to Y, wherein the carriercomprises at least one of an albumin or fragment thereof, a serumprotein, a lipoprotein, bovine serum albumin (BSA), keyhole limpethemocyanin (KLH), egg ovalbumin, bovine thyroglobulin (BTG), a syntheticpoly(amino acids), a poly amino-polysaccharide, a poly nucleic acid, apoly amino acid, a polysaccharide, or a solid particle.
 23. An antibodythat binds specifically to the compound of any one of claims 21-22. 24.The antibody of claim 23, wherein the antibody binds to a cycliccyclophosphamide with a dissociation constant (K_(d)) that isnumerically less than 1/10 the dissociation constant for acycliccyclophosphamide of formula (III)


25. The antibody of claim 24, wherein the antibody binds to a cycliccyclophosphamide with a dissociation constant (K_(d)) that isnumerically less than 1/1000 the dissociation constant for acycliccyclophosphamide of formula (III).
 26. The antibody of any one of claims23-25, wherein the antibody comprises a monoclonal antibody.
 27. Theantibody of any one of claims 23-25, wherein the antibody comprises apolyclonal antibody.
 28. A method of making an antibody that bindsspecifically to cyclophosphamide, the method comprising: administeringthe immunogen of any of claims 11-12 or the compound of any one ofclaims 21-22 to a host organism; isolating antibody-producing cells orantibodies from the host organism; and screening antibodies derived fromthe antibody-producing cells or the antibodies from the host organismfor affinity to cyclophosphamide.
 29. The method of claim 28, whereinthe host organism comprises a mouse, rat, hamster, guinea pig, rabbit,donkey, or goat.
 30. The method of any one of claims 28-29, wherein thecarrier comprises KLH.
 31. The method of any one of claims 28-29,wherein the antibody-producing cells are isolated, wherein antibodiesderived from the antibody-producing cells are screened for affinity tocyclophosphamide, and wherein the antibody that binds specifically tocyclophosphamide is monoclonal.
 32. The method of claim 31, furthercomprising constructing hybridomas from the isolated antibody-producingcells.
 33. The method of claim 31 or 32, further comprising screeningnucleic acids from the isolated antibody-producing cells by phagedisplay.
 34. The method of any one of claims 28-33, further comprisingscreening for antibodies that bind specifically to cyclophosphamidecompared to an acyclic metabolite of formula (III).
 35. The method ofany one of claims 31-34, further comprising expressing a nucleic acidencoding the antibody in a host cell.
 36. The method of any one ofclaims 28-29, wherein the antibodies from the host organism are screenedfor affinity to cyclophosphamide, and wherein the antibody that bindsspecifically to cyclophosphamide is polyclonal.
 37. A method of makingan antibody that binds specifically to ifosfamide, the methodcomprising: administering the immunogen of any of claims 11-12 or thecompound of any one of claims 21-22 to a host organism; isolatingantibody-producing cells or antibodies from the host organism; andscreening antibodies derived from the antibody-producing cells or theantibodies from the host organism for affinity to ifosfamide.
 38. Themethod of claim 37, wherein the host organism comprises a mouse, rat,hamster, guinea pig, rabbit, donkey, or goat.
 39. The method of any oneof claims 37-38, wherein the carrier comprises KLH.
 40. The method ofany one of claims 37-39, wherein the antibody-producing cells areisolated, wherein antibodies derived from the antibody-producing cellsare screened for affinity to ifosfamide, and wherein the antibody thatbinds specifically to cyclophosphamide is monoclonal.
 41. The method ofclaim 40, further comprising constructing hybridomas from the isolatedantibody-producing cells.
 42. The method of claim 40 or 41, furthercomprising screening nucleic acids from the isolated antibody-producingcells by phage display.
 43. The method of any one of claims 37-42,further comprising screening for antibodies that bind specifically tocyclophosphamide compared to an acyclic metabolite of formula (III). 44.The method of any one of claims 40-43, further comprising expressing anucleic acid encoding the antibody in a host cell.
 45. The method of anyone of claims 37-39, wherein the antibodies from the host organism arescreened for affinity to cyclophosphamide, and wherein the antibody thatbinds specifically to cyclophosphamide is polyclonal.